An input vector of 400 dimensions for dipeptide compositions

Abstract The right-handed single-stranded?-helix proteins are characterized as virulence factors, allergens, toxins that are threat to human health. Identification of these proteins from nike blazers low uk  amino acid sequence is of great importance as these proteins are potential targets for Cheap Nike Free Running Shoes Uk anti-bacterial and fungal agents.

In this paper, support vector machine (SVM) has been used to predict Nike Free Run Trainers Women the presence of?-helix fold in protein sequences using dipeptide composition. An input vector of 400 dimensions for dipeptide compositions is used to search for the Womens Nike Roshe Run Uk presence of putative rungs or coils, the conserved secondary structure, found in?-helix proteins. An average accuracy of 89.2% with Matthew’s correlation coefficient of 0.75 is obtained in a 5-fold cross-validation technique.

In addition, a… PSSM  nike air max 2014 uk was also used to score the query sequence of proteins identified as?-helices by SVM. The method recognizes right-handed?-helices with 100% sensitivity and 99.6% specificity on test set of known protein structures Nike Trainers Uk Wholesale.

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